44. Kumar M, Shrestha BB, Chinnathambi S, Fujiwara T, Sivaniah E, and Pandian GN. Biomass-derived coriander carbon quantum dots for oxidative stress mitigation and nanoscale imaging in plants. Plant Nano Biol 100236 (2025)

---

43. Farrag AMAS, Ota K, Yoshimura H, Takemoto M, Mitarai T, Kamikawa T, Abo M, Singh VP, Cui C, Zhou L, Ishidate F, Fujiwara T, Sato SI, Hori Y, Ozawa T, Kikuchi K, and Uesugi M. Live-cell monitoring and omics analysis of liquid-solid transitions of biomolecular condensates. J Am Chem Soc (2025)

---

42. Takato M, Sakamoto S, Nonaka H, Tanimura Valor FY, Tamura T, and Hamachi I. Photoproximity labeling of endogenous receptors in the live mouse brain in minutes. Nat Chem Biol 21: 109-119 (2025)

41. Rodriguez-Reza CM, Sato-Carlton A, and Carlton PM. Length-sensitive partitioning of Caenorhabditis elegans meiotic chromosomes responds to proximity and number of crossover sites. Curr Biol 34: 4998-5016.e6 (2024)

---

40. Maki K, Fukute J, and Adachi T. Super-resolution imaging reveals nucleolar encapsulation by single-stranded DNA. J Cell Sci 137: jcs262039 (2024)

---

39. Zhou C, Wu YK, Ishidate F, Fujiwara TK, and Kengaku M. Nesprin-2 coordinates opposing microtubule motors during nuclear migration in neurons. J Cell Biol 223: e202405032 (2024)

---

38. Fukute J, Maki K, and Adachi T. The nucleolar shell provides anchoring sites for DNA untwisting. Commun Biol 7: 83 (2024)

---

37. Ando R, Shimozono S, Ago H, Takagi M, Sugiyama M, Kurokawa H, Hirano M, Ueno G, Ishidate F, Fujiwara T, Okada Y, Yamamoto M, and Miyawaki A. StayGold variants for molecular fusion and membrane targeting applications. Nat Methods 21: 648-656 (2024)

36. Yu Y, and Yoshimura SH. Self-assembly of CIP4 drives actin-mediated asymmetric pit-closing in clathrin-mediated endocytosis. Nat Commun 14: 4602 (2023)

---

35. Fujiwara TK, Tsunoyama TA, Takeuchi S, Kalay Z, Nagai Y, Kalkbrenner T, Nemoto YL, Chen LH, Shibata ACE, Iwasawa K, Ritchie KP, Suzuki KGN, and Kusumi A. Ultrafast single-molecule imaging reveals focal adhesion nano-architecture and molecular dynamics. J Cell Biol 222: e202110162 (2023)

---

34. Fujiwara TK, Takeuchi S, Kalay Z, Nagai Y, Tsunoyama TA, Kalkbrenner T, Iwasawa K, Ritchie KP, Suzuki KGN, and Kusumi A. Development of ultrafast camera-based single fluorescent-molecule imaging for cell biology. J Cell Biol 222: e202110160 (2023)

---

33. Umebayashi M, Takemoto S, Reymond L, Sundukova M, Hovius R, Bucci A, Heppenstall PA, Yokota H, Johnsson K, and Riezman H. A covalently linked probe to monitor local membrane properties surrounding plasma membrane proteins. J Cell Biol 222: e202206119 (2023)

32. Motani K, Saito-Tarashima N, Nishino K, Yamauchi S, Minakawa N, and Kosako H. The Golgi-resident protein ACBD3 concentrates STING at ER-Golgi contact sites to drive export from the ER. Cell Rep 41: 111868 (2022)

---

31. Ogasawara F and Ueda K. ABCA1 and cholesterol transfer protein Aster-A promote an asymmetric cholesterol distribution in the plasma membrane. J Biol Chem 298: 102702 (2022)

---

30. Hirano M, Ando R, Shimozono S, Sugiyama M, Takeda N, Kurokawa H, Deguchi R, Endo K, Haga K, Takai-Todaka R, Inaura S, Matsumura Y, Hama H, Okada Y, Fujiwara T, Morimoto T, Katayama K, and Miyawaki A. A highly photostable and bright green fluorescent protein. Nat Biotechnol 40: 1132–1142 (2022)

---

29. Noda N, Jung Y, Ado G, Mizuhata Y, Higuchi M, Ogawa T, Ishidate F, Sato S, Kurata H, Tokitoh N, and Uesugi M. Glucose as a protein-condensing cellular solute. ACS Chem Biol 17: 567-575 (2022)

28. Minakawa T, Matoba T, Ishidate F, Fujiwara TK, Takehana S, Tabata Y, and Yamashita JK. Extracellular vesicles synchronize cellular phenotypes of differentiating cells. J Extracell Vesicles 10: e12147 (2021)

---

27. Deshimaru M, Kinoshita-Kawada M, Kubota K, Watanabe T, Tanaka Y, Hirano S, Ishidate F, Hiramoto M, Ishikawa M, Uehara Y, Okano H, Hirose S, Fujioka S, Iwasaki K, Yuasa-Kawada J, Mishima T, and Tsuboi Y. DCTN1 binds to TDP-43 and regulates TDP-43 aggregation. Int J Mol Sci 22: 3985 (2021)

26. Tsubono Y, Kawamoto Y, Hidaka T, Pandian GN, Hashiya K, Bando T, and Sugiyama H. A near-infrared fluorogenic pyrrole-imidazole polyamide probe for live-cell imaging of telomeres. J Am Chem Soc 142: 17356-17363 (2020)

---

25. Tamura T, Fujisawa A, Tsuchiya M, Shen Y, Nagao K, Kawano S, Tamura Y, Endo T, Umeda M, and Hamachi I. Organelle membrane-specific chemical labeling and dynamic imaging in living cells. Nat Chem Biol 16: 1361-1367 (2020)

---

24. Katoh Y, Chiba S, and Nakayama K. Practical method for superresolution imaging of primary cilia and centrioles by expansion microscopy using an amplibody for fluorescence signal amplification. Mol Biol Cell 31: 2195-2206 (2020)

---

23. Ochi Y, Kon A, Sakata T, Nakagawa MM, Nakazawa N, Kakuta M, Kataoka K, Koseki H, Nakayama M, Morishita D, Tsuruyama T, Saiki R, Yoda A, Okuda R, Yoshizato T, Yoshida K, Shiozawa Y, Nannya Y, Kotani S, Kogure Y, Kakiuchi N, Nishimura T, Makishima H, Malcovati L, Yokoyama A, Takeuchi K, Sugihara E, Sato TA, Sanada M, Takaori-Kondo A, Cazzola M, Kengaku M, Miyano S, Shirahige K, Suzuki HI, and Ogawa S. Combined cohesin-RUNX1 deficiency synergistically perturbs chromatin looping and causes myelodysplastic syndromes. Cancer Discov 10: 836-853 (2020)

---

22. Nomura K, Nakanishi M, Ishidate F, Iwata K, and Taruno A. All-electrical Ca(2+)-independent signal transduction mediates attractive sodium taste in taste buds. Neuron 106: 816-829 (2020)

---

21. Yoshioka-Kobayashi K, Matsumiya M, Niino Y, Isomura A, Kori H, Miyawaki A, and Kageyama R. Coupling delay controls synchronized oscillation in the segmentation clock. Nature 580: 119-123 (2020)

---

20. Takagi A, Isomura A, Yoshioka-Kobayashi K, and Kageyama R. Dynamic Delta-like1 expression in presomitic mesoderm cells during somite segmentation. Gene Expr Patterns 35: 119094 (2020)

19. Kobayashi T, Piao W, Takamura T, Kori H, Miyachi H, Kitano S, Iwamoto Y, Yamada M, Imayoshi I, Shioda S, Ballabio A, and Kageyama R. Enhanced lysosomal degradation maintains the quiescent state of neural stem cells. Nat Commun 10: 5446 (2019)

---

18. Tateya T, Sakamoto S, Ishidate F, Hirashima T, Imayoshi I, and Kageyama R. Three-dimensional live imaging of Atoh1 reveals the dynamics of hair cell induction and organization in the developing cochlea. Development 146: dev177881 (2019)

---

17. Umeshima H, Nomura KI, Yoshikawa S, Hörning M, Tanaka M, Sakuma S, Arai F, Kaneko M, and Kengaku M. Local traction force in the proximal leading process triggers nuclear translocation during neuronal migration. Neurosci Res 142: 38-48 (2019)

16. Fujisawa K, Tamura T, Yasueda Y, Kuwata K, and Hamachi I. Chemical profiling of the endoplasmic reticulum proteome using designer labeling reagents. J Am Chem Soc 140: 17060-17070 (2018)

---

15. Niwa M, Hirayama T, Oomoto I, Wang DO, and Nagasawa H. Fe(II) Ion release during endocytotic uptake of iron visualized by a membrane-anchoring Fe(II) fluorescent probe. ACS Chem Biol 20: 1853-1961 (2018)

---

14. Wu YK, Umeshima H, Kurisu J, and Kengaku M. Nesprins and opposing microtubule motors generate a point force driving directional nuclear motion in migrating neuron. Development 145: dev158782 (2018)

13. Wang DO, Ninomiya K, Mori C, Koyama A, Haan M, Kitabatake M, Hagiwara M, Chida K, Takahashi SI, Ohno M, and Kataoka N. Transport granules bound with nuclear cap binding protein and exon junction complex are associated with microtubules and spatially separated from eIF4E granules and P bodies in human neuronal processes. Front Mol Biosci 4: article 93 (2017)

---

12. Shirai YM, Tsunoyama TA, Hiramoto-Yamaki N, Hirosawa KM, Shibata ACE, Kondo K, Tsurumune A, Ishidate F, Kusumi A, and Fujiwara TK. Cortical actin nodes: Their dynamics and recruitment of podosomal proteins as revealed by super-resolution and single-molecule microscopy. PLoS ONE 12: e0188778 (2017)

11. Takano Y, Numata T, Fujishima K, Miyake K, Nakao K, Grove WD, Inoue R, Kengaku M, Sakaki S, Mori Y, Murakami T, Imahori H. Optical control of neuronal firing via photoinduced electron transfer in donor–acceptor conjugates. Chem Sci 7: 3331-3337 (2016)

---

10. Oh SW, Onomoto K, Wakimoto M, Onoguchi K, Ishidate F, Fujiwara T, Yoneyama M, Kato H, Fujita T. Leader-containing uncapped viral transcript activates RIG-I in antiviral stress granules. PLoS Pathog 12: e1005444 (2016)

9. Imayoshi I, Ishidate F, and Kageyama R. Real-time imaging of bHLH transcription factors reveals their dynamic control in the multipotency and fate choice of neural stem cells. Front Cell Neurosci 9: 288 (2015)

---

8. Oomoto I, Suzuki-Hirano A, Umeshima H, Han YW, Yanagisawa H, Carlton P, Harada Y, Kengaku M, Okamoto A, Shimogori T, and Wang DO. ECHO-liveFISH: in vivo RNA labeling reveals dynamic regulation of nuclear RNA foci in living tissues. Nucleic Acids Res 43: e126 (2015)

---

7. Nakatsuji H, Numata T, Morone N, Kaneko S, Mori Y, Imahori H, and Murakami T. Thermosensitive ion channel activation in single neuronal cells by using surface-engineered plasmonic nanoparticles. Angew Chem Int Edit 54: 11725-11729 (2015)

6. Sadaie W, Harada Y, Matsuda M, and Aoki K. Quantitative in vivo FCCS analyses highlight the importance of competitive effects in the regulation of protein-protein interactions. Mol Cell Biol 34: 3272-3290 (2014)

5. Yoshii T, Ikeda M, and Hamachi I. Two-photon-responsive supramolecular hydrogel for controlling materials motion in micrometer space. Angew Chem 126: 7392-7395 (2013)

---

4. Shibata ACE, Chen LMH, Nagai R, Ishidate F, Chadda R, Miwa Y, Naruse K, Shirai YM, Fujiwara TK, and Kusumi A. Rac1 recruitment to the archipelago structure of the focal adhesion through the fluid membrane as revealed by single-molecule analysis. Cytoskeleton 70: 161-177 (2013)

---

3. Imayoshi I, Isomura A, Harima Y, Kawaguchi K, Kori H, Miyachi H, Fujiwara T, Ishidate F, and Kageyama R. Oscillatory control of factors determining multipotency and fate in mouse neural progenitors. Science 342: 1203-1208 (2013)

---

2. Takamatsu S, Onoguchi K, Onomoto K, Narita R, Takahasi K, Ishidate F, Fujiwara TK, Yoneyama M, Kato H, and Fujita T. Functional characterization of domains of IPS-1 using an inducible oligomerization system. PLoS One 8: e53578 (2013)

---

1. Diring S, Wang DO, Kim C, Kondo M, Chen Y, Kitagawa S, Kamei K, and Furukawa S. Localized cell stimulation by nitric oxide using a photoactive porous coordination polymer platform. Nat Commun 4: 2684 (2013)